Changeset 27301 in project

Timestamp:

08/26/12 10:54:46 (9 years ago)

Author:

Ivan Raikov

Message:

nemo: added supporting scripts to Golgi cell example

Location:

release/4/nemo/trunk/examples/Golgi/parts

Files:

• Golgi_Ca.nemo (modified) (1 diff)
• Golgi_Ca2.nemo (modified) (1 diff)
• Golgi_CaHVA.hoc (added)
• Golgi_CaHVA.nemo (modified) (1 diff)
• Golgi_CaHVA.ses (added)
• Golgi_CaLVA.hoc (added)
• Golgi_CaLVA.ses (added)
• Golgi_HCN1.hoc (added)
• Golgi_HCN1.nemo (modified) (1 diff)
• Golgi_HCN1.ses (added)
• Golgi_HCN2.hoc (added)
• Golgi_HCN2.ses (added)
• Golgi_KA.hoc (added)
• Golgi_KA.ses (added)
• Golgi_KCa.hoc (added)
• Golgi_KCa.ses (added)
• Golgi_KM.hoc (added)
• Golgi_KM.ses (added)
• Golgi_KV.hoc (added)
• Golgi_KV.ses (added)
• Golgi_Na.hoc (added)
• Golgi_Na.ses (added)
• Golgi_NaP.hoc (added)
• Golgi_NaP.ses (added)
• Golgi_NaR.hoc (added)
• Golgi_NaR.ses (added)
• Golgi_SK2.hoc (added)
• Golgi_SK2.ses (added)
• Makefile (added)
• OFF_ON_OFF.ses (added)
• OFF_ON_OFF_protocol.hoc (added)
• mechanisms.hoc (added)

release/4/nemo/trunk/examples/Golgi/parts/Golgi_Ca.nemo

@@ -17 +17 @@
               (const  d       = .2)
               (const  cao     = 2.)
-              (const  cai0    = 1e-4)
+              (const  cai0    = 50e-6)
               (const  beta    = 1.3)
-              
-              (d (ca) =  ((neg (ica) / (2 * F * d)) -
-                          (beta * (cai - cai0)))
+
+              (d (ca) =  ((neg (ica) / (2 * F * d) * 1e4) -
+                          (beta * (ca - cai0)))
                          (initial cai0))
               

release/4/nemo/trunk/examples/Golgi/parts/Golgi_Ca2.nemo

@@ -18 +18 @@
               (const  d       = .2)
               (const  ca2o     = 2.)
-              (const  ca2i0    = 1e-4)
+              (const  ca2i0    = 50e-6)
               (const  beta    = 1.3)
               
-              (d (ca2) =  ((neg (ica2) / (2 * F * d * 1e4)) -
-                          (beta * (ca2i - ca2i0)))
+              (d (ca2) =  ((neg (ica2) / (2 * F * d) * 1e4) -
+                          (beta * (ca2 - ca2i0)))
                          (initial ca2i0))
               

release/4/nemo/trunk/examples/Golgi/parts/Golgi_CaHVA.nemo

@@ -56 +56 @@
                            (m-power    2)
                            (h-power    1)
-                           (m-alpha    (alpha_s (v Q10)))
-                           (m-beta     (beta_s (v Q10)))
-                           (h-alpha    (alpha_u (v Q10)))
-                           (h-beta     (beta_u (v Q10)))
+                           (m-inf      (alpha_s (v Q10) / (alpha_s (v Q10) + beta_s (v Q10)) ))
+                           (m-tau      (1 / (alpha_s (v Q10) + beta_s (v Q10)) ))
+                           (h-inf      (alpha_u (v Q10) / (alpha_u (v Q10) + beta_u (v Q10)) ))
+                           (h-tau      (1 / (alpha_u (v Q10) + beta_u (v Q10)) ))
                            ))
-
                          
                          )
               
               (component (type pore)
-                         (const  gbar  = 0.00046)
+                         (const  gbar  = 460e-6)
                          (output gbar ))
               

release/4/nemo/trunk/examples/Golgi/parts/Golgi_HCN1.nemo

@@ -54 +54 @@
                             (initial o_slow_inf))
 
-                         (o_slow_plus_fast = (o_slow + o_fast))
+                         (o_slow_plus_o_fast = (o_slow + o_fast))
                          
-                         (output o_slow_plus_fast)
+                         (output o_slow_plus_o_fast)
 
                          )