1 | ;; |
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2 | ;; An implementation of the K-d tree spatial indexing data structure. |
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3 | ;; |
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4 | ;; http://en.wikipedia.org/wiki/K-d_tree |
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5 | ;; |
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6 | ;; The k-d tree is a binary search tree in which every branching node |
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7 | ;; contains a k-dimensional point, and every leaf node contains a set |
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8 | ;; of points. Every branching node represents a splitting hyperplane |
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9 | ;; that divides the space into two parts, known as half-spaces. |
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10 | ;; |
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11 | ;; Points to the left of the splitting hyperplane are contained in the |
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12 | ;; left subtree of the node and points right of the hyperplane are |
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13 | ;; contained in the right subtree. The splitting hyperplane is chosen |
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14 | ;; so as to be perpendicular to one of the axes in the k-dimensional |
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15 | ;; space. The axis at each branching level is chosen in a round-robin |
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16 | ;; fashion. For instance, in 3-D space, at level 0, the chosen axis is |
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17 | ;; X, so points are divided according to their X-coordinates; at level |
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18 | ;; 1, the chosen axis is Y, so the points are divided according to |
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19 | ;; their Y-coordinates; at the next branch level the chosen axis is Z, |
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20 | ;; and so on. |
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21 | ;; |
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22 | ;; |
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23 | ;; This code is based on the Haskell kd-tree library implementation of |
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24 | ;; K-D trees. |
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25 | ;; |
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26 | ;; Copyright 2012 Ivan Raikov and the Okinawa Institute of |
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27 | ;; Science and Technology. |
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28 | ;; |
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29 | ;; This program is free software: you can redistribute it and/or |
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30 | ;; modify it under the terms of the GNU General Public License as |
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31 | ;; published by the Free Software Foundation, either version 3 of the |
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32 | ;; License, or (at your option) any later version. |
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33 | ;; |
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34 | ;; This program is distributed in the hope that it will be useful, but |
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35 | ;; WITHOUT ANY WARRANTY; without even the implied warranty of |
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36 | ;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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37 | ;; General Public License for more details. |
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38 | ;; |
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39 | ;; A full copy of the GPL license can be found at |
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40 | ;; <http://www.gnu.org/licenses/>. |
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41 | ;; |
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42 | |
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43 | (module kd-tree |
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44 | |
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45 | ( |
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46 | <Point> default-<Point> Point3d Point2d |
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47 | point? make-point |
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48 | |
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49 | <KdTree> default-<KdTree> KdTree3d KdTree2d |
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50 | |
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51 | kd-tree? |
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52 | kd-tree-empty? |
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53 | kd-tree->list |
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54 | kd-tree->list* |
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55 | kd-tree-map |
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56 | kd-tree-for-each |
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57 | kd-tree-for-each* |
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58 | kd-tree-fold-right |
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59 | kd-tree-fold-right* |
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60 | kd-tree-subtrees |
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61 | kd-tree-node-points |
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62 | kd-tree-node-indices |
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63 | kd-tree-min-index |
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64 | kd-tree-max-index |
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65 | kd-tree-size |
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66 | ) |
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67 | |
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68 | (import scheme chicken data-structures foreign) |
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69 | |
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70 | (require-library srfi-1 srfi-4 extras cis) |
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71 | (require-extension typeclass datatype) |
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72 | |
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73 | (import (only srfi-1 xcons fold list-tabulate split-at every fold-right take filter filter-map remove zip) |
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74 | (only srfi-4 f64vector-ref f64vector-set! f64vector-length make-f64vector f64vector->list |
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75 | u32vector-ref u32vector-set!) |
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76 | (only extras fprintf pp) |
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77 | (only foreign foreign-lambda) |
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78 | (prefix cis cis:)) |
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79 | |
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80 | |
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81 | (define-class <Point> |
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82 | ;; dimension returns the number of coordinates of a point. |
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83 | dimension ;; Point -> Int |
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84 | |
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85 | ;; gets the k'th coordinate, starting from 0. |
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86 | coord ;; Int * Point -> Double |
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87 | |
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88 | ;; compares the given coordinates |
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89 | compare-coord ;; Int * Point * Point -> Bool |
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90 | |
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91 | ;; returns the squared distance between two points. |
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92 | dist2 ;; Point * Point -> Double |
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93 | |
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94 | ;; returns the scaled squared distance between two points. |
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95 | sdist2 ;; Point * Point * [Int] -> Double |
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96 | |
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97 | ;; returns 0, negative or positive number depending on the |
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98 | ;; distance between two points |
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99 | compare-distance |
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100 | |
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101 | ) |
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102 | |
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103 | (define (minimum-by lst less? . rest) |
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104 | (if (null? lst) #f |
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105 | (if (null? rest) |
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106 | (let recur ((lst (cdr lst)) (m (car lst))) |
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107 | (if (null? lst) m |
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108 | (if (less? (car lst) m) |
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109 | (recur (cdr lst) (car lst)) |
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110 | (recur (cdr lst) m) |
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111 | )) |
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112 | ) |
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113 | (let recur ((lst (cdr lst)) |
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114 | (rest (map cdr rest)) |
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115 | (m (map car (cons lst rest)))) |
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116 | (if (null? lst) m |
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117 | (if (less? (car lst) (car m)) |
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118 | (recur (cdr lst) (map cdr rest) (map car (cons lst rest))) |
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119 | (recur (cdr lst) (map cdr rest) m) |
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120 | )) |
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121 | ) |
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122 | ))) |
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123 | |
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124 | (define (sum lst) (fold + 0. lst)) |
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125 | |
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126 | (define (default-<Point> dimension coord) |
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127 | |
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128 | (let* ((dist2 |
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129 | (lambda (a b) |
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130 | (let ((diff2 (lambda (i) (let ((v (- (coord i a) (coord i b)))) (* v v))))) |
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131 | (sum (list-tabulate (dimension a) diff2))))) |
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132 | |
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133 | (sdist2 |
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134 | (lambda (factors) |
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135 | (let ((factors2 (map (lambda (n) (* n n)) factors))) |
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136 | (lambda (a b) |
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137 | (let ((diff2 (lambda (i) (let ((v (- (coord i a) (coord i b)))) (* v v))))) |
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138 | (let ((v (sum (map * (list-tabulate (dimension a) diff2) factors2)))) |
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139 | v)))))) |
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140 | |
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141 | (compare-distance |
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142 | (lambda (p a b . reltol) |
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143 | (let ((delta (- (dist2 p a) (dist2 p b)))) |
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144 | (if (null? reltol) |
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145 | delta |
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146 | (if (<= delta (car reltol)) 0 delta))))) |
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147 | |
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148 | (compare-coord |
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149 | (lambda (c a b) |
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150 | (< (coord c a) (coord c b)))) |
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151 | |
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152 | ) |
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153 | |
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154 | (make-<Point> |
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155 | dimension coord compare-coord dist2 sdist2 compare-distance) |
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156 | )) |
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157 | |
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158 | (define point? vector?) |
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159 | (define make-point vector) |
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160 | |
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161 | |
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162 | (define Point3d |
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163 | (default-<Point> |
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164 | (lambda (p) (and (point? p) 3)) |
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165 | (lambda (i p) (vector-ref p i)) |
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166 | )) |
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167 | |
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168 | (define Point2d |
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169 | (default-<Point> |
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170 | (lambda (p) (and (point? p) 2)) |
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171 | (lambda (i p) (vector-ref p i)) |
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172 | )) |
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173 | |
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174 | |
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175 | (define-class <KdTree> |
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176 | |
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177 | ;; constructs a kd-tree from a list of points |
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178 | list->kd-tree |
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179 | ;; nearest neighbor of a point |
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180 | kd-tree-nearest-neighbor |
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181 | ;; the index of the nearest neighbor of a point |
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182 | kd-tree-nearest-neighbor* |
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183 | ;; neighbors of a point within radius r |
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184 | kd-tree-near-neighbors |
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185 | ;; neighbors of a point within radius r (using point indices) |
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186 | kd-tree-near-neighbors* |
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187 | ;; k nearest neighbors of a point |
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188 | kd-tree-k-nearest-neighbors |
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189 | ;; removes a point from the tree |
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190 | kd-tree-remove |
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191 | ;; retrieves all points between two planes |
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192 | kd-tree-slice |
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193 | ;; retrieves all points between two planes (using point indices) |
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194 | kd-tree-slice* |
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195 | ;; checks that the kd-tree properties are preserved |
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196 | kd-tree-is-valid? |
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197 | kd-tree-all-subtrees-are-valid? |
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198 | |
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199 | ) |
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200 | |
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201 | |
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202 | (define (positive-or-zero-integer? x) |
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203 | (and (integer? x) (or (zero? x) (positive? x)))) |
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204 | |
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205 | |
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206 | (define (positive-integer? x) |
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207 | (and (integer? x) (positive? x))) |
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208 | |
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209 | |
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210 | (define-datatype kd-tree kd-tree? |
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211 | (KdNode (left kd-tree?) |
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212 | (p point?) |
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213 | (i positive-or-zero-integer?) |
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214 | (v (lambda (v) (or (not v) v))) |
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215 | (right kd-tree?) |
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216 | (axis positive-or-zero-integer?) |
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217 | (ci cis:cis?) |
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218 | ) |
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219 | (KdLeaf (ii cis:cis?) |
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220 | (pp (lambda (lst) (every point? lst))) |
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221 | (vv (lambda (v) (or (list? v) (not v)))) |
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222 | (axis positive-or-zero-integer?) ) |
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223 | ) |
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224 | |
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225 | |
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226 | (define (kd-tree-empty? t) |
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227 | (cases kd-tree t |
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228 | (KdLeaf (ii pp vv axis) (cis:empty? ii)) |
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229 | (else #f))) |
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230 | |
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231 | |
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232 | (define (kd-tree-map f t) |
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233 | (cases kd-tree t |
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234 | (KdLeaf (ii pp vv axis) |
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235 | (KdLeaf ii (map f pp) vv axis)) |
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236 | (KdNode (l x i v r axis ci) |
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237 | (KdNode (kd-tree-map f l) |
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238 | (f x) |
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239 | i v |
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240 | (kd-tree-map f r) |
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241 | axis ci)) |
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242 | )) |
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243 | |
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244 | (define (kd-tree-for-each f t) |
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245 | (cases kd-tree t |
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246 | (KdLeaf (ii pp vv axis) (for-each f pp)) |
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247 | (KdNode (l x i v r axis ci) |
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248 | (begin |
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249 | (kd-tree-for-each f l) |
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250 | (f x) |
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251 | (kd-tree-for-each f r) |
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252 | )) |
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253 | )) |
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254 | |
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255 | |
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256 | (define (kd-tree-for-each* f t) |
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257 | (cases kd-tree t |
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258 | (KdLeaf (ii pp vv axis) |
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259 | (if vv (for-each f (zip (reverse (cis:elements ii)) vv) pp) |
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260 | (for-each f (reverse (cis:elements ii)) pp))) |
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261 | (KdNode (l x i v r axis ci) |
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262 | (begin |
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263 | (kd-tree-for-each* f l) |
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264 | (if v (f (list i v) x) (f i x)) |
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265 | (kd-tree-for-each* f r) |
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266 | )) |
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267 | )) |
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268 | |
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269 | |
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270 | (define (kd-tree-fold-right f init t) |
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271 | (cases kd-tree t |
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272 | (KdLeaf (ii pp vv axis) |
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273 | (fold-right f init pp)) |
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274 | (KdNode (l p i v r axis ci) |
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275 | (let* ((init2 (kd-tree-fold-right f init r)) |
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276 | (init3 (f p init2))) |
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277 | (kd-tree-fold-right f init3 l))) |
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278 | )) |
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279 | |
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280 | |
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281 | (define (kd-tree-fold-right* f init t) |
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282 | (cases kd-tree t |
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283 | (KdLeaf (ii pp vv axis) |
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284 | (if vv |
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285 | (fold-right f init (zip (reverse (cis:elements ii)) vv) pp) |
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286 | (fold-right f init (reverse (cis:elements ii)) pp))) |
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287 | (KdNode (l x i v r axis ci) |
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288 | (let* ((init2 (kd-tree-fold-right* f init r)) |
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289 | (init3 (if v (f (list i v) x init2) (f i x init2)))) |
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290 | (kd-tree-fold-right* f init3 l))) |
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291 | )) |
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292 | |
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293 | |
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294 | |
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295 | |
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296 | (define (kd-tree->list t) |
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297 | (kd-tree-fold-right cons '() t)) |
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298 | |
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299 | |
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300 | (define (kd-tree->list* t) |
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301 | (kd-tree-fold-right* |
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302 | (lambda (iv x ax) (cons (list iv x) ax)) |
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303 | '() t)) |
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304 | |
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305 | |
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306 | ;; Returns a list containing t and all its subtrees, including the |
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307 | ;; leaf nodes. |
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308 | |
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309 | (define (kd-tree-subtrees t) |
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310 | (cases kd-tree t |
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311 | (KdLeaf (ii pp vv axis) (list t)) |
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312 | (KdNode (l x i v r axis ci) |
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313 | (append (kd-tree-subtrees l) |
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314 | (list t) |
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315 | (kd-tree-subtrees r))) |
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316 | )) |
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317 | |
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318 | |
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319 | (define (kd-tree-node-points t) |
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320 | (cases kd-tree t |
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321 | (KdLeaf (ii pp vv axis) pp) |
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322 | (KdNode (l x i v r axis ci) (list x)) |
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323 | )) |
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324 | |
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325 | (define (kd-tree-node-indices t) |
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326 | (cases kd-tree t |
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327 | (KdLeaf (ii pp vv axis) (cis:elements ii)) |
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328 | (KdNode (l x i v r axis ci) (list i)) |
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329 | )) |
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330 | |
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331 | (define (kd-tree-node-values t) |
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332 | (cases kd-tree t |
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333 | (KdLeaf (ii pp vv axis) vv) |
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334 | (KdNode (l x i v r axis ci) (list v)) |
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335 | )) |
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336 | |
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337 | (define (kd-tree-size t) |
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338 | (cases kd-tree t |
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339 | (KdLeaf (ii pp vv axis) (cis:cardinal ii)) |
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340 | (KdNode (l x i v r axis ci) (cis:cardinal ci)))) |
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341 | |
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342 | (define (kd-tree-min-index t) |
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343 | (cases kd-tree t |
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344 | (KdLeaf (ii pp vv axis) (cis:get-min ii)) |
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345 | (KdNode (l x i v r axis ci) (cis:get-min ci)))) |
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346 | |
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347 | (define (kd-tree-max-index t) |
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348 | (cases kd-tree t |
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349 | (KdLeaf (ii pp vv axis) (cis:get-max ii)) |
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350 | (KdNode (l x i v r axis ci) (cis:get-max ci)))) |
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351 | |
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352 | |
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353 | |
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354 | |
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355 | ;; construct a kd-tree from a list of points |
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356 | (define=> (make-list->kd-tree/depth <Point>) |
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357 | |
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358 | (lambda (make-point make-value) |
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359 | |
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360 | (letrec ( |
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361 | (split |
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362 | (lambda (m n points depth) |
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363 | |
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364 | (let* ((axis (modulo depth (dimension (make-point (car points))))) |
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365 | (cmpfn (lambda (p0 p1) |
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366 | (compare-coord axis (make-point p0) (make-point p1)))) |
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367 | (sorted (sort points cmpfn)) |
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368 | (median-index (quotient (- n m) 2))) |
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369 | |
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370 | (let-values (((lt gte) (split-at sorted median-index))) |
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371 | (values (car gte) median-index lt (cdr gte)))) |
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372 | )) |
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373 | |
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374 | (list->kd-tree/depth |
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375 | (lambda (m n points depth #!key (leaf-factor 10) (offset 0)) |
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376 | |
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377 | (cond |
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378 | ((null? points) (KdLeaf cis:empty '() '() depth)) |
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379 | |
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380 | ((<= (- n m) leaf-factor) |
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381 | (let ((k (- n m))) |
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382 | |
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383 | (let* ((es (take points k)) |
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384 | (ps (map make-point es)) |
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385 | (ii (cis:shift offset (cis:interval m (- n 1)))) |
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386 | (vs (and make-value |
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387 | (map (lambda (i e) (make-value i e)) |
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388 | (reverse (cis:elements ii)) |
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389 | es))) |
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390 | ) |
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391 | |
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392 | (KdLeaf ii ps vs (modulo depth (dimension (car ps)))) |
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393 | ))) |
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394 | |
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395 | ((null? (cdr points)) |
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396 | (let* ((e (car points)) |
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397 | (ps (list (make-point e)) ) |
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398 | (vs (and make-value (list (make-value m e))))) |
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399 | |
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400 | (KdLeaf (cis:shift offset (cis:singleton m) ) |
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401 | ps vs |
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402 | (modulo depth (dimension (car ps)))) |
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403 | )) |
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404 | |
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405 | (else |
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406 | (let-values (((median median-index lt gte) |
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407 | (split m n points depth))) |
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408 | |
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409 | |
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410 | (let* ((depth1 (+ 1 depth)) |
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411 | (i (+ m median-index offset)) |
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412 | (p (make-point median)) |
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413 | (v (and make-value (make-value i median))) |
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414 | |
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415 | (axis (modulo depth (dimension p)))) |
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416 | |
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417 | (KdNode (list->kd-tree/depth m (+ m median-index) lt depth1 |
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418 | leaf-factor: leaf-factor) |
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419 | p i v |
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420 | (list->kd-tree/depth (+ m median-index 1) n gte depth1 |
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421 | leaf-factor: leaf-factor) |
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422 | axis |
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423 | (cis:shift offset (cis:interval m (- n 1)))))) |
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424 | ))) |
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425 | )) |
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426 | list->kd-tree/depth |
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427 | ))) |
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428 | |
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429 | ;; Returns the nearest neighbor of p in tree t. |
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430 | |
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431 | (define=> (make-kd-tree-nearest-neighbor <Point>) |
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432 | (define (tree-empty? t) (cases kd-tree t (KdLeaf (ii pp vv axis) (cis:empty? ii)) (else #f))) |
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433 | (letrec ((find-nearest |
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434 | (lambda (t1 t2 p probe xp x-probe) |
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435 | |
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436 | (let* ((candidates1 |
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437 | (let ((best1 (nearest-neighbor t1 probe))) |
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438 | (or (and best1 (list best1 p)) (list p)))) |
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439 | |
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440 | (sphere-intersects-plane? |
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441 | (let ((v (- x-probe xp))) |
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442 | (< (* v v) (dist2 probe (car candidates1))))) |
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443 | |
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444 | (candidates2 |
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445 | (if sphere-intersects-plane? |
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446 | (let ((nn (nearest-neighbor t2 probe))) |
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447 | (if nn (append candidates1 (list nn)) candidates1)) |
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448 | candidates1))) |
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449 | |
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450 | (minimum-by candidates2 (lambda (a b) (negative? (compare-distance probe a b)))) |
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451 | ))) |
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452 | |
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453 | |
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454 | (nearest-neighbor |
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455 | (lambda (t probe) |
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456 | (cases kd-tree t |
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457 | (KdLeaf (ii pp vv axis) |
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458 | (minimum-by pp (lambda (a b) (negative? (compare-distance probe a b))))) |
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459 | |
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460 | (KdNode (l p i v r axis ci) |
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461 | (if (and (tree-empty? l) |
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462 | (tree-empty? r)) p |
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463 | (let ((x-probe (coord axis probe)) |
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464 | (xp (coord axis p))) |
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465 | |
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466 | (if (<= x-probe xp) |
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467 | (find-nearest l r p probe xp x-probe) |
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468 | (find-nearest r l p probe xp x-probe)) |
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469 | )) |
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470 | )) |
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471 | ))) |
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472 | |
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473 | nearest-neighbor |
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474 | )) |
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475 | |
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476 | ;; Returns the index of the nearest neighbor of p in tree t. |
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477 | |
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478 | (define=> (make-kd-tree-nearest-neighbor* <Point>) |
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479 | |
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480 | (define (tree-empty? t) (cases kd-tree t (KdLeaf (ii pp vv axis) (cis:empty? ii)) (else #f))) |
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481 | |
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482 | (letrec ((find-nearest |
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483 | (lambda (t1 t2 i v p probe xp x-probe) |
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484 | |
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485 | (let* ((candidates1 |
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486 | (let ((best1 (nearest-neighbor t1 probe))) |
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487 | (or (and best1 (list best1 (if v (list (list i v) p) (list i p)))) |
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488 | (list (if v (list (list i v) p) (list i p)))) |
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489 | )) |
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490 | |
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491 | (sphere-intersects-plane? |
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492 | (let ((v (- x-probe xp))) |
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493 | (< (* v v) (dist2 probe (cadar candidates1))))) |
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494 | |
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495 | (candidates2 |
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496 | (if sphere-intersects-plane? |
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497 | (let ((nn (nearest-neighbor t2 probe))) |
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498 | (if nn (append candidates1 (list nn)) candidates1)) |
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499 | candidates1))) |
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500 | |
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501 | (let ((v (minimum-by candidates2 (lambda (a b) (negative? (compare-distance probe (cadr a) (cadr b))))))) |
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502 | v) |
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503 | ))) |
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504 | |
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505 | |
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506 | (nearest-neighbor |
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507 | (lambda (t probe) |
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508 | (cases kd-tree t |
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509 | (KdLeaf (ii pp vv axis) |
---|
510 | (let ((res |
---|
511 | (if vv |
---|
512 | (minimum-by pp (lambda (a b) (negative? (compare-distance probe a b))) |
---|
513 | (zip (reverse (cis:elements ii)) vv )) |
---|
514 | (minimum-by pp (lambda (a b) (negative? (compare-distance probe a b))) |
---|
515 | (reverse (cis:elements ii)))))) |
---|
516 | (and res (reverse res)))) |
---|
517 | |
---|
518 | (KdNode (l p i v r axis ci) |
---|
519 | |
---|
520 | (if (and (tree-empty? l) |
---|
521 | (tree-empty? r)) |
---|
522 | |
---|
523 | (if v (list (list i v) p) (list i p)) |
---|
524 | |
---|
525 | (let ((x-probe (coord axis probe)) |
---|
526 | (xp (coord axis p)) |
---|
527 | (xi i)) |
---|
528 | (if (<= x-probe xp) |
---|
529 | (find-nearest l r i v p probe xp x-probe) |
---|
530 | (find-nearest r l i v p probe xp x-probe)) |
---|
531 | )) |
---|
532 | )) |
---|
533 | ))) |
---|
534 | |
---|
535 | nearest-neighbor |
---|
536 | )) |
---|
537 | |
---|
538 | |
---|
539 | ;; near-neighbors t r p returns all neighbors within distance r from p in tree t. |
---|
540 | |
---|
541 | (define=> (make-kd-tree-near-neighbors <Point>) |
---|
542 | (define (tree-empty? t) (cases kd-tree t (KdLeaf (ii pp vv axis) (cis:empty? ii)) (else #f))) |
---|
543 | (letrec ((near-neighbors |
---|
544 | (lambda (t radius probe fdist filter-fn) |
---|
545 | (cases kd-tree t |
---|
546 | (KdLeaf (ii pp vv axis) |
---|
547 | (let ((r2 (* radius radius))) |
---|
548 | (filter-fn probe pp r2))) |
---|
549 | |
---|
550 | (KdNode (l p i v r axis ci) |
---|
551 | (let ((maybe-pivot (filter-fn probe (list p) (* radius radius)))) |
---|
552 | |
---|
553 | (if (and (tree-empty? l) |
---|
554 | (tree-empty? r)) |
---|
555 | |
---|
556 | maybe-pivot |
---|
557 | |
---|
558 | (let ((x-probe (coord axis probe)) |
---|
559 | (xp (coord axis p))) |
---|
560 | |
---|
561 | (if (<= x-probe xp) |
---|
562 | |
---|
563 | (let ((nearest (append maybe-pivot (near-neighbors l radius probe fdist filter-fn)))) |
---|
564 | (if (> (+ x-probe (abs radius)) xp) |
---|
565 | (append (near-neighbors r radius probe fdist filter-fn) nearest) |
---|
566 | nearest)) |
---|
567 | |
---|
568 | (let ((nearest (append maybe-pivot (near-neighbors r radius probe fdist filter-fn)))) |
---|
569 | (if (< (- x-probe (abs radius)) xp) |
---|
570 | (append (near-neighbors l radius probe fdist filter-fn) nearest) |
---|
571 | nearest))) |
---|
572 | )))) |
---|
573 | )) |
---|
574 | )) |
---|
575 | (lambda (t radius probe #!key (factors #f) (with-distance? #f)) |
---|
576 | (let* ((dist-fn (if factors (sdist2 factors) dist2)) |
---|
577 | (filter-fn (if with-distance? |
---|
578 | (lambda (probe pp d2) (filter-map (lambda (p) (let ((pd (dist-fn probe p))) |
---|
579 | (and (<= pd d2) (list p (sqrt pd) )))) pp)) |
---|
580 | (lambda (probe pp d2) (filter (lambda (p) (<= (dist-fn probe p) d2)) pp)) |
---|
581 | )) |
---|
582 | ) |
---|
583 | |
---|
584 | (near-neighbors t radius probe dist-fn filter-fn) |
---|
585 | )) |
---|
586 | )) |
---|
587 | |
---|
588 | |
---|
589 | (define=> (make-kd-tree-near-neighbors* <Point>) |
---|
590 | (define (tree-empty? t) (cases kd-tree t (KdLeaf (ii pp vv axis) (cis:empty? ii)) (else #f))) |
---|
591 | (letrec ((near-neighbors |
---|
592 | (lambda (t radius probe fdist filter-fn) |
---|
593 | (cases kd-tree t |
---|
594 | |
---|
595 | (KdLeaf (ii pp vv axis) |
---|
596 | (let ((r2 (* radius radius))) |
---|
597 | (filter-fn probe pp ii vv r2))) |
---|
598 | |
---|
599 | (KdNode (l p i v r axis ci) |
---|
600 | (let ((maybe-pivot (filter-fn probe (list p) (cis:singleton i) (list v) (* radius radius)))) |
---|
601 | |
---|
602 | (if (and (tree-empty? l) |
---|
603 | (tree-empty? r)) |
---|
604 | |
---|
605 | maybe-pivot |
---|
606 | |
---|
607 | (let ((x-probe (coord axis probe)) |
---|
608 | (xp (coord axis p))) |
---|
609 | |
---|
610 | (if (<= x-probe xp) |
---|
611 | |
---|
612 | (let ((nearest (append maybe-pivot (near-neighbors l radius probe fdist filter-fn)))) |
---|
613 | (if (> (+ x-probe (abs radius)) xp) |
---|
614 | (append (near-neighbors r radius probe fdist filter-fn) nearest) |
---|
615 | nearest)) |
---|
616 | |
---|
617 | (let ((nearest (append maybe-pivot (near-neighbors r radius probe fdist filter-fn)))) |
---|
618 | (if (< (- x-probe (abs radius)) xp) |
---|
619 | (append (near-neighbors l radius probe fdist filter-fn) nearest) |
---|
620 | nearest))) |
---|
621 | )) |
---|
622 | )) |
---|
623 | )) |
---|
624 | )) |
---|
625 | (lambda (t radius probe #!key (factors #f) (with-distance? #f)) |
---|
626 | (let* ((dist-fn (if factors (sdist2 factors) dist2)) |
---|
627 | (filter-fn (if with-distance? |
---|
628 | (lambda (probe pp ii vv r2) |
---|
629 | (if vv |
---|
630 | (filter-map (lambda (i v p) (let ((pd (dist-fn probe p))) (and (<= pd r2) (list (list i v) p (sqrt pd))))) |
---|
631 | (reverse (cis:elements ii)) vv pp) |
---|
632 | (filter-map (lambda (i p) (let ((pd (dist-fn probe p))) (and (<= pd r2) (list i p (sqrt pd))))) |
---|
633 | (reverse (cis:elements ii)) pp) |
---|
634 | )) |
---|
635 | (lambda (probe pp ii vv r2) |
---|
636 | (if vv |
---|
637 | (filter-map (lambda (i v p) (and (<= (dist-fn probe p) r2) (list (list i v) p))) |
---|
638 | (reverse (cis:elements ii)) vv pp) |
---|
639 | (filter-map (lambda (i p) (and (<= (dist-fn probe p) r2) (list i p))) |
---|
640 | (reverse (cis:elements ii)) pp) |
---|
641 | )) |
---|
642 | )) |
---|
643 | ) |
---|
644 | |
---|
645 | (near-neighbors t radius probe dist-fn filter-fn) |
---|
646 | |
---|
647 | )) |
---|
648 | )) |
---|
649 | |
---|
650 | |
---|
651 | |
---|
652 | ;; Returns the k nearest points to p within tree. |
---|
653 | (define=> (make-kd-tree-k-nearest-neighbors <Point>) |
---|
654 | (lambda (kd-tree-remove kd-tree-nearest-neighbor) |
---|
655 | (letrec ((k-nearest-neighbors |
---|
656 | (lambda (t k probe) |
---|
657 | (cases kd-tree t |
---|
658 | |
---|
659 | (KdLeaf (ii pp vv axis) |
---|
660 | (let recur ((res '()) (pp pp) (k k)) |
---|
661 | (if (or (<= k 0) (null? pp)) |
---|
662 | res |
---|
663 | (let ((nearest (minimum-by pp (lambda (a b) (negative? (compare-distance probe a b)))))) |
---|
664 | (recur (cons nearest res) |
---|
665 | (remove (lambda (p) (equal? p nearest)) pp) |
---|
666 | (- k 1)) |
---|
667 | )) |
---|
668 | )) |
---|
669 | |
---|
670 | (else |
---|
671 | (if (<= k 0) '() |
---|
672 | (let* ((nearest (kd-tree-nearest-neighbor t probe)) |
---|
673 | (tree1 (kd-tree-remove t nearest))) |
---|
674 | (cons nearest (k-nearest-neighbors tree1 (- k 1) probe))) |
---|
675 | )) |
---|
676 | )) |
---|
677 | )) |
---|
678 | k-nearest-neighbors))) |
---|
679 | |
---|
680 | |
---|
681 | ;; removes the point p from t. |
---|
682 | (define=> (make-kd-tree-remove <Point>) |
---|
683 | (lambda (list->kd-tree list->kd-tree*) |
---|
684 | (letrec ((tree-remove |
---|
685 | (lambda (t p-kill) |
---|
686 | |
---|
687 | |
---|
688 | ; (fprintf (current-error-port) "kd-tree-remove: t = ~A~%" t) |
---|
689 | ; (fprintf (current-error-port) "kd-tree-remove: p-kill = ~A~%" p-kill) |
---|
690 | |
---|
691 | (cases kd-tree t |
---|
692 | (KdLeaf (ii pp vv axis) |
---|
693 | |
---|
694 | ; (fprintf (current-error-port) "kd-tree-remove (KdLeaf): vv = ~A~%" vv) |
---|
695 | |
---|
696 | (if vv |
---|
697 | (let ((ipvs (filter-map |
---|
698 | (lambda (i p v) (and (equal? p p-kill) (list i p v))) |
---|
699 | (reverse (cis:elements ii)) pp vv))) |
---|
700 | |
---|
701 | ; (fprintf (current-error-port) "kd-tree-remove (KdLeaf): ipvs = ~A~%" ipvs) |
---|
702 | ; (fprintf (current-error-port) "kd-tree-remove (KdLeaf): pp = ~A~%" pp) |
---|
703 | ; (fprintf (current-error-port) "kd-tree-remove (KdLeaf): vv = ~A~%" vv) |
---|
704 | |
---|
705 | (and (pair? ipvs) |
---|
706 | (let ((ii1 (fold (lambda (i ax) (cis:remove i ax)) |
---|
707 | ii (map car ipvs))) |
---|
708 | (pp1 (fold (lambda (x ax) (remove (lambda (p) (equal? p x)) ax)) |
---|
709 | pp (map cadr ipvs))) |
---|
710 | (vv1 (fold (lambda (x ax) |
---|
711 | (remove (lambda (p) (equal? p x)) ax)) |
---|
712 | vv (map caddr ipvs))) |
---|
713 | ) |
---|
714 | ; (fprintf (current-error-port) "kd-tree-remove (KdLeaf): ii1 = ~A~%" ii1) |
---|
715 | |
---|
716 | (KdLeaf ii1 pp1 vv1 axis)) |
---|
717 | )) |
---|
718 | |
---|
719 | (let ((ips (filter-map (lambda (i p) (and (equal? p p-kill) (list i p))) |
---|
720 | (reverse (cis:elements ii)) pp))) |
---|
721 | (and (pair? ips) |
---|
722 | (let ((ii1 (fold (lambda (i ax) (cis:remove i ax)) |
---|
723 | ii (map car ips))) |
---|
724 | (pp1 (fold (lambda (x ax) (remove (lambda (p) (equal? p x)) ax)) |
---|
725 | pp (map cadr ips))) |
---|
726 | ) |
---|
727 | (KdLeaf ii1 pp1 vv axis)) |
---|
728 | )) |
---|
729 | )) |
---|
730 | |
---|
731 | (KdNode (l p i v r axis ci) |
---|
732 | |
---|
733 | ; (fprintf (current-error-port) "kd-tree-remove (KdNode): p = ~A~%" p) |
---|
734 | ; (fprintf (current-error-port) "kd-tree-remove (KdNode): p-kill = ~A~%" p-kill) |
---|
735 | |
---|
736 | (if (equal? p p-kill) |
---|
737 | |
---|
738 | (let ((offset (if (kd-tree-empty? l) (+ i 1) (kd-tree-min-index l)))) |
---|
739 | (if v |
---|
740 | (let ((pts1 (append (kd-tree->list* l) (kd-tree->list* r)))) |
---|
741 | (list->kd-tree* 0 (length pts1) pts1 axis offset: offset)) |
---|
742 | (let ((pts1 (append (kd-tree->list l) (kd-tree->list r)))) |
---|
743 | (list->kd-tree 0 (length pts1) pts1 axis offset: offset)) |
---|
744 | )) |
---|
745 | |
---|
746 | (if (< (coord axis p-kill) |
---|
747 | (coord axis p)) |
---|
748 | |
---|
749 | (let* ((l1 (tree-remove l p-kill)) |
---|
750 | (r1 (or (and l1 r) (tree-remove r p-kill))) |
---|
751 | (ll (or l1 l)) |
---|
752 | (rr (or r1 r))) |
---|
753 | |
---|
754 | (and (or l1 r1) |
---|
755 | (let ((min1 (cond ((and (kd-tree-empty? ll) |
---|
756 | (kd-tree-empty? rr)) |
---|
757 | i) |
---|
758 | ((kd-tree-empty? ll) |
---|
759 | (kd-tree-min-index rr)) |
---|
760 | (else |
---|
761 | (kd-tree-min-index ll)))) |
---|
762 | (max1 (cond ((and (kd-tree-empty? ll) |
---|
763 | (kd-tree-empty? rr)) |
---|
764 | i) |
---|
765 | ((kd-tree-empty? rr) |
---|
766 | (kd-tree-max-index ll)) |
---|
767 | (else |
---|
768 | (kd-tree-max-index rr)))) |
---|
769 | ) |
---|
770 | |
---|
771 | (KdNode ll p i v rr axis |
---|
772 | (cis:add i (cis:interval min1 max1))) |
---|
773 | ))) |
---|
774 | |
---|
775 | (let* ((r1 (tree-remove r p-kill)) |
---|
776 | (l1 (or (and r1 l) (tree-remove l p-kill))) |
---|
777 | (ll (or l1 l)) |
---|
778 | (rr (or r1 r)) |
---|
779 | ) |
---|
780 | |
---|
781 | (and (or r1 l1) |
---|
782 | (let ((min1 (cond ((and (kd-tree-empty? ll) |
---|
783 | (kd-tree-empty? rr)) |
---|
784 | i) |
---|
785 | ((kd-tree-empty? ll) |
---|
786 | (kd-tree-min-index rr)) |
---|
787 | (else |
---|
788 | (kd-tree-min-index ll)))) |
---|
789 | (max1 (cond ((and (kd-tree-empty? ll) |
---|
790 | (kd-tree-empty? rr)) |
---|
791 | i) |
---|
792 | ((kd-tree-empty? rr) |
---|
793 | (kd-tree-max-index ll)) |
---|
794 | (else |
---|
795 | (kd-tree-max-index rr)))) |
---|
796 | ) |
---|
797 | (KdNode ll p i v rr axis |
---|
798 | (cis:add i (cis:interval min1 max1))) |
---|
799 | ))) |
---|
800 | ))) |
---|
801 | )) |
---|
802 | )) |
---|
803 | tree-remove))) |
---|
804 | |
---|
805 | |
---|
806 | ;; Checks whether the K-D tree property holds for a given tree. |
---|
807 | ;; |
---|
808 | ;; Specifically, it tests that all points in the left subtree lie to |
---|
809 | ;; the left of the plane, p is on the plane, and all points in the |
---|
810 | ;; right subtree lie to the right. |
---|
811 | |
---|
812 | (define=> (make-kd-tree-is-valid? <Point>) |
---|
813 | (lambda (t) |
---|
814 | (cases kd-tree t |
---|
815 | (KdLeaf (ii pp vv axis) #t) |
---|
816 | |
---|
817 | (KdNode (l p i v r axis ci) |
---|
818 | (let ((x (coord axis p))) |
---|
819 | (and (every (lambda (y) (<= (coord axis y) x )) |
---|
820 | (kd-tree->list l)) |
---|
821 | (every (lambda (y) (>= (coord axis y) x)) |
---|
822 | (kd-tree->list r))))) |
---|
823 | ))) |
---|
824 | |
---|
825 | |
---|
826 | ;; Checks whether the K-D tree property holds for the given tree and |
---|
827 | ;; all subtrees. |
---|
828 | |
---|
829 | (define (make-kd-tree-all-subtrees-are-valid? kd-tree-is-valid?) |
---|
830 | (lambda (t) (every kd-tree-is-valid? (kd-tree-subtrees t)))) |
---|
831 | |
---|
832 | |
---|
833 | (define=> (make-kd-tree-slice <Point>) |
---|
834 | (lambda (x-axis x1 x2 t) |
---|
835 | (let recur ((t t) (pts '())) |
---|
836 | (cases kd-tree t |
---|
837 | |
---|
838 | (KdLeaf (ii pp vv axis) |
---|
839 | (append (filter (lambda (p) |
---|
840 | (and (<= x1 (coord x-axis p)) |
---|
841 | (<= (coord x-axis p) x2))) |
---|
842 | pp) |
---|
843 | pts)) |
---|
844 | |
---|
845 | |
---|
846 | (KdNode (l p i v r axis ci) |
---|
847 | (if (= axis x-axis) |
---|
848 | |
---|
849 | (cond ((and (<= x1 (coord axis p)) |
---|
850 | (<= (coord axis p) x2)) |
---|
851 | (recur l (cons p (recur r pts)))) |
---|
852 | |
---|
853 | ((< (coord axis p) x1) |
---|
854 | (recur r pts)) |
---|
855 | |
---|
856 | ((< x2 (coord axis p)) |
---|
857 | (recur l pts))) |
---|
858 | |
---|
859 | (if (and (<= x1 (coord x-axis p)) |
---|
860 | (<= (coord x-axis p) x2)) |
---|
861 | (recur l (cons p (recur r pts))) |
---|
862 | (recur l (recur r pts))) |
---|
863 | )) |
---|
864 | )) |
---|
865 | )) |
---|
866 | |
---|
867 | |
---|
868 | (define=> (make-kd-tree-slice* <Point>) |
---|
869 | (lambda (x-axis x1 x2 t) |
---|
870 | (let recur ((t t) (pts '())) |
---|
871 | (cases kd-tree t |
---|
872 | (KdLeaf (ii pp vv axis) |
---|
873 | (append |
---|
874 | (if vv |
---|
875 | (filter-map (lambda (i v p) |
---|
876 | (and (<= x1 (coord x-axis p)) |
---|
877 | (<= (coord x-axis p) x2) |
---|
878 | (list (list i v) p))) |
---|
879 | (reverse (cis:elements ii)) vv pp) |
---|
880 | (filter-map (lambda (i p) |
---|
881 | (and (<= x1 (coord x-axis p)) |
---|
882 | (<= (coord x-axis p) x2) |
---|
883 | (list i p))) |
---|
884 | (reverse (cis:elements ii)) pp)) |
---|
885 | pts)) |
---|
886 | |
---|
887 | (KdNode (l p i v r axis ci) |
---|
888 | (if (= axis x-axis) |
---|
889 | |
---|
890 | (cond ((and (<= x1 (coord axis p)) |
---|
891 | (<= (coord axis p) x2)) |
---|
892 | (recur l (cons (if v (list (list i v) p) (list i p)) (recur r pts)))) |
---|
893 | |
---|
894 | ((< (coord axis p) x1) |
---|
895 | (recur r pts)) |
---|
896 | |
---|
897 | ((< x2 (coord axis p)) |
---|
898 | (recur l pts))) |
---|
899 | |
---|
900 | (if (and (<= x1 (coord x-axis p)) |
---|
901 | (<= (coord x-axis p) x2)) |
---|
902 | (recur l (cons (if v (list (list i v) p) (list i p)) (recur r pts))) |
---|
903 | (recur l (recur r pts))) |
---|
904 | )) |
---|
905 | )) |
---|
906 | )) |
---|
907 | |
---|
908 | (define (default-<KdTree> point-class) |
---|
909 | (let* ((list->kd-tree/depth |
---|
910 | (make-list->kd-tree/depth point-class)) |
---|
911 | (kd-tree-remove |
---|
912 | ((make-kd-tree-remove point-class) |
---|
913 | (list->kd-tree/depth identity #f) |
---|
914 | (list->kd-tree/depth cadr (lambda (i v) (cadar v))))) |
---|
915 | (kd-tree-nearest-neighbor |
---|
916 | (make-kd-tree-nearest-neighbor point-class))) |
---|
917 | |
---|
918 | (make-<KdTree> |
---|
919 | (lambda (points #!key |
---|
920 | (leaf-factor 10) |
---|
921 | (make-point identity) |
---|
922 | (make-value #f) |
---|
923 | (offset 0) |
---|
924 | ) |
---|
925 | ((list->kd-tree/depth make-point make-value) |
---|
926 | 0 (length points) points 0 |
---|
927 | leaf-factor: leaf-factor offset: offset)) |
---|
928 | |
---|
929 | (make-kd-tree-nearest-neighbor point-class) |
---|
930 | (make-kd-tree-nearest-neighbor* point-class) |
---|
931 | (make-kd-tree-near-neighbors point-class) |
---|
932 | (make-kd-tree-near-neighbors* point-class) |
---|
933 | ((make-kd-tree-k-nearest-neighbors point-class) |
---|
934 | kd-tree-remove kd-tree-nearest-neighbor) |
---|
935 | kd-tree-remove |
---|
936 | (make-kd-tree-slice point-class) |
---|
937 | (make-kd-tree-slice* point-class) |
---|
938 | (make-kd-tree-is-valid? point-class) |
---|
939 | (make-kd-tree-all-subtrees-are-valid? |
---|
940 | (make-kd-tree-is-valid? point-class)) |
---|
941 | ))) |
---|
942 | |
---|
943 | (define KdTree3d |
---|
944 | (default-<KdTree> Point3d)) |
---|
945 | |
---|
946 | (define KdTree2d |
---|
947 | (default-<KdTree> Point2d)) |
---|
948 | |
---|
949 | |
---|
950 | |
---|
951 | ) |
---|
952 | |
---|