source: project/wiki/neurolucida @ 27938

Last change on this file since 27938 was 27938, checked in by Jim Ursetto, 7 years ago

Remove explicit wiki.call-cc.org hostname from intrawiki links

Strip hostname from all intrawiki links, making the URL relative
but leaving the path as absolute. This permits offline qwiki use.
References to /chicken-projects (egg index, RSS) were left as-is.

Also removed most percent encoding, as it's not currently handled
well by qwiki or chickadee, and spaces work fine in source URLs.

File size: 2.4 KB
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1
2== Neurolucida
3
4[[toc:]]
5
6{{neurolucida}} is a program to read Neurolucida XML files and convert
7them to SWC format. It is distributed via the
8[[/eggs|Chicken package distribution system]].
9
10Documentation on using {{neurolucida}} is available at
11[[/eggref/4/neurolucida]].
12
13The {{neurolucida}} source code can be viewed online at
14[[http://bugs.call-cc.org/browser/release/4/neurolucida]].
15
16=== Installation
17
18In order to install NEMO, you must first install Chicken Scheme and
19then use the {{chicken-install}} program to download and compile NEMO.
20
21
22==== Prerequisites
23
24You will need to obtain and install the Chicken Scheme compiler and
25programming environment. The latest official release is available from
26the following URL:
27
28  http://code.call-cc.org/releases/4.7.0/chicken-4.7.0.tar.gz
29
30On Mac OS X, you will also need to install Xcode, because Chicken must
31be compiled with the {{gcc}} compiler.  On Windows, you will need to
32install either one of the MinGW or Cygwin packages in order to obtain
33{{gcc}}.
34
35==== Installation of Chicken Scheme
36
37
38First, you will need to download the Chicken source archive from the
39above location, then unpack it and change to the directory extracted
40from the archive:
41
42   tar zxf chicken-4.7.0.tar.gz
43   cd chicken-4.7.0
44
45Then, you need to compile and install:
46
47* On Linux:
48  make PLATFORM=linux PREFIX=$HOME/chicken install
49* On Mac OS X and Xcode 3.1 or later:
50  make PLATFORM=macosx ARCH=x86-64 PREFIX=$HOME/chicken C_COMPILER=gcc-4.2 install
51* On Mac OS X (64-bit):
52  make PLATFORM=macosx ARCH=x86-64 PREFIX=$HOME/chicken install
53* On Mac OS X (32-bit):
54  make PLATFORM=macosx PREFIX=$HOME/chicken install
55* On MinGW or Cygwin:
56  make PLATFORM=mingw PREFIX=C:\\chicken install
57  make PLATFORM=cygwin PREFIX=C:\\chicken install
58
59==== Installation of neurolucida
60
61After Chicken Scheme has been successfully installed, {{neurolucida}}
62can be installed using the {{chicken-install}} program:
63
64  ~/chicken/bin/chicken-install neurolucida
65
66
67On Windows, the tilde must be replaced with C:\\ or whichever drive
68you have installed Chicken on).
69
70=== Precompiled executables
71
72Packages with precompiled neurolucida executables are available for
73the platform listed below. Please note that these may be out of
74date. The most recent version of neurolucida can always be obtained by
75installing with chicken-install.
76
77==== Mac OS X
78
79* [[http://www.irp.oist.jp/cns/neurolucida-1.4_macosx.tgz|neurolucida 1.4 for Mac OS X]]
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